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 rotational equivariance




The Importance of Being Scalable: Improving the Speed and Accuracy of Neural Network Interatomic Potentials Across Chemical Domains

Neural Information Processing Systems

Scaling has been a critical factor in improving model performance and generalization across various fields of machine learning.It involves how a model's performance changes with increases in model size or input data, as well as how efficiently computational resources are utilized to support this growth. Despite successes in scaling other types of machine learning models, the study of scaling in Neural Network Interatomic Potentials (NNIPs) remains limited. NNIPs act as surrogate models for ab initio quantum mechanical calculations, predicting the energy and forces between atoms in molecules and materials based on atomic configurations. The dominant paradigm in this field is to incorporate numerous physical domain constraints into the model, such as symmetry constraints like rotational equivariance. We contend that these increasingly complex domain constraints inhibit the scaling ability of NNIPs, and such strategies are likely to cause model performance to plateau in the long run.


CoMIR: Contrastive Multimodal Image Representation for Registration

Neural Information Processing Systems

We propose contrastive coding to learn shared, dense image representations, referred to as CoMIRs (Contrastive Multimodal Image Representations). CoMIRs enable the registration of multimodal images where existing registration methods often fail due to a lack of sufficiently similar image structures. CoMIRs reduce the multimodal registration problem to a monomodal one, in which general intensity-based, as well as feature-based, registration algorithms can be applied. The method involves training one neural network per modality on aligned images, using a contrastive loss based on noise-contrastive estimation (InfoNCE). Unlike other contrastive coding methods, used for, e.g., classification, our approach generates image-like representations that contain the information shared between modalities. We introduce a novel, hyperparameter-free modification to InfoNCE, to enforce rotational equivariance of the learnt representations, a property essential to the registration task. We assess the extent of achieved rotational equivariance and the stability of the representations with respect to weight initialization, training set, and hyperparameter settings, on a remote sensing dataset of RGB and near-infrared images. We evaluate the learnt representations through registration of a biomedical dataset of bright-field and second-harmonic generation microscopy images; two modalities with very little apparent correlation. The proposed approach based on CoMIRs significantly outperforms registration of representations created by GAN-based image-to-image translation, as well as a state-of-the-art, application-specific method which takes additional knowledge about the data into account.




Our main contribution is to use contrastive learning for creating image-like embeddings suitable for registration, and

Neural Information Processing Systems

We thank the reviewers for their thorough evaluation. Apart from comparing with [29], we also mention [22] and [25] Table 3] for the biomedical dataset) we believe this is feasible. The reviews contain many suggestions on how to clarify and improve the article. The main computational cost of the method is linear w.r.t. We thank the reviewer for advising us to explore gCCA, which seems highly relevant.


Do we need equivariant models for molecule generation?

Nowara, Ewa M., Rackers, Joshua, Suriana, Patricia, Kessel, Pan, Shen, Max, Watkins, Andrew Martin, Maser, Michael

arXiv.org Artificial Intelligence

Deep generative models are increasingly used for molecular discovery, with most recent approaches relying on equivariant graph neural networks (GNNs) under the assumption that explicit equivariance is essential for generating high-quality 3D molecules. However, these models are complex, difficult to train, and scale poorly. We investigate whether non-equivariant convolutional neural networks (CNNs) trained with rotation augmentations can learn equivariance and match the performance of equivariant models. We derive a loss decomposition that separates prediction error from equivariance error, and evaluate how model size, dataset size, and training duration affect performance across denoising, molecule generation, and property prediction. To our knowledge, this is the first study to analyze learned equivariance in generative tasks.


The Importance of Being Scalable: Improving the Speed and Accuracy of Neural Network Interatomic Potentials Across Chemical Domains

Neural Information Processing Systems

Scaling has been a critical factor in improving model performance and generalization across various fields of machine learning.It involves how a model's performance changes with increases in model size or input data, as well as how efficiently computational resources are utilized to support this growth. Despite successes in scaling other types of machine learning models, the study of scaling in Neural Network Interatomic Potentials (NNIPs) remains limited. NNIPs act as surrogate models for ab initio quantum mechanical calculations, predicting the energy and forces between atoms in molecules and materials based on atomic configurations. The dominant paradigm in this field is to incorporate numerous physical domain constraints into the model, such as symmetry constraints like rotational equivariance. We contend that these increasingly complex domain constraints inhibit the scaling ability of NNIPs, and such strategies are likely to cause model performance to plateau in the long run.


SRE-Conv: Symmetric Rotation Equivariant Convolution for Biomedical Image Classification

Du, Yuexi, Zhang, Jiazhen, Zeevi, Tal, Dvornek, Nicha C., Onofrey, John A.

arXiv.org Artificial Intelligence

Convolutional neural networks (CNNs) are essential tools for computer vision tasks, but they lack traditionally desired properties of extracted features that could further improve model performance, e.g., rotational equivariance. Such properties are ubiquitous in biomedical images, which often lack explicit orientation. While current work largely relies on data augmentation or explicit modules to capture orientation information, this comes at the expense of increased training costs or ineffective approximations of the desired equivariance. To overcome these challenges, we propose a novel and efficient implementation of the Symmetric Rotation-Equivariant (SRE) Convolution (SRE-Conv) kernel, designed to learn rotation-invariant features while simultaneously compressing the model size. The SRE-Conv kernel can easily be incorporated into any CNN backbone. We validate the ability of a deep SRE-CNN to capture equivariance to rotation using the public MedMNISTv2 dataset (16 total tasks). SRE-Conv-CNN demonstrated improved rotated image classification performance accuracy on all 16 test datasets in both 2D and 3D images, all while increasing efficiency with fewer parameters and reduced memory footprint. The code is available at https://github.com/XYPB/SRE-Conv.